Bowles, D.J. (1990). Defense-related proteins in higher plants. Annu. Rev. Biochem. 59 873-907.
Camejo, D., Guzmán-Cedeño, Á., and Moreno, A. (2016). Reactive oxygen species, essential molecules, during plant–pathogen interactions. Plant Physiol. Biochem. 103: 10-23.
Chen, Y.-C., Holmes, E.C., Rajniak, J., Kim, J.-G., Tang, S., Fischer, C.R., Mudgett, M.B., and Sattely, E.S. (2018). N-hydroxy-pipecolic acid is a mobile metabolite that induces systemic disease resistance in Arabidopsis. Proc Natl Acad Sci 115(21): E4920-E4929.
Clarkson, D.T., and Hanson, J.B. (1980). The mineral nutrition of higher plants. Annu. Rev. Plant Physiol.
Conrath, U. (2006). Systemic acquired resistance. Plant Signal Behav 1(4): 179-184.
Cristina, M.S., Petersen, M., and Mundy, J. (2010). Mitogen-activated protein kinase signaling in plants. Annu Rev Plant Biol 61(1): 621-649.
Dangl, J.L., Horvath, D.M., and Staskawicz, B.J. (2013). Pivoting the plant immune system from dissection to deployment. Science 341(6147): 746-751.
Djami-Tchatchou, A.T., Ncube, E.N., Steenkamp, P.A., and Dubery, I.A. (2017). Similar, but different: structurally related azelaic acid and hexanoic acid trigger differential metabolomic and transcriptomic responses in tobacco cells. BMC Plant Biol. 17: 1-15.
Eulgem, T., Rushton, P.J., Robatzek, S., and Somssich, I.E. (2000). The WRKY superfamily of plant transcription factors. Trends Plant Sci. 5(5): 199-206.
Feng, K., Hou, X.-L., Xing, G.-M., Liu, J.-X., Duan, A.-Q., Xu, Z.-S., Li, M.-Y., Zhuang, J., and Xiong, A.-S. (2020). Advances in AP2/ERF super-family transcription factors in plant. Crit. Rev. Biotechnol. 40(6): 750-776.
Gilroy, S., Suzuki, N., Miller, G., Choi, W.-G., Toyota, M., Devireddy, A.R., and Mittler, R. (2014). A tidal wave of signals: calcium and ROS at the forefront of rapid systemic signaling. Trends Plant Sci. 19(10): 623-630.
Glazebrook, J. (2005). Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens. Annu. Rev. Phytopathol. 43(1): 205-227.
Haghpanah, M., Jelodar, N.B., Zarrini, H.N., Pakdin-Parizi, A., and Dehestani, A. (2021). Silicon foliar exogenous altered the activity of crucial ROS pathway enzymes in tomatoes (Solanum lycopersicum). Russ. Agric. Sci. 47: 485-489.
Haghpanah, M., Jelodar, N.B., Zarrini, H.N., Pakdin-Parizi, A., and Dehestani, A. (2024). New insights into azelaic acid-induced resistance against Alternaria Solani in tomato plants. BMC Plant Biol. 24(1): 687.
Haghpanah, M., Najafi-Zarini, H., and Babaeian-Jelodar, N. (2023). Differential physiological and molecular responses of susceptible and resistant tomato genotypes to Alternaria solani infection. J. Crop Prot. 12(3): 227-240.
Inukai, S., Kock, K.H., and Bulyk, M.L. (2017). Transcription factor–DNA binding: beyond binding site motifs. Curr. Opin. Genet. Dev. 43: 110-119.
Ithal, N., Recknor, J., Nettleton, D., Maier, T., Baum, T.J., and Mitchum, M.G. (2007). Developmental transcript profiling of cyst nematode feeding cells in soybean roots. Plant Mol. Biol. Interact 20(5): 510-525.
Johnson, C., Boden, E., and Arias, J. (2003). Salicylic acid and NPR1 induce the recruitment of trans-activating TGA factors to a defense gene promoter in Arabidopsis. Plant Cell Rep. 15(8): 1846-1858.
Jones, J.D., and Dangl, J.L. (2006). The plant immune system. Nature 444(7117): 323-329.
Jung, H.W., Tschaplinski, T.J., Wang, L., Glazebrook, J., and Greenberg, J.T. (2009). Priming in systemic plant immunity. Science 324(5923): 89-91.
Kandoth, P.K., Ranf, S., Pancholi, S.S., Jayanty, S., Walla, M.D., Miller, W., Howe, G.A., Lincoln, D.E., and Stratmann, J.W. (2007). Tomato MAPKs LeMPK1, LeMPK2, and LeMPK3 function in the systemin-mediated defense response against herbivorous insects. Proc Natl Acad Sci 104(29): 12205-12210.
Kesarwani, M., Yoo, J., and Dong, X. (2007). Genetic interactions of TGA transcription factors in the regulation of pathogenesis-related genes and disease resistance in Arabidopsis. J. Plant Physiol. 144(1): 336-346.
Kohli, S.K., Khanna, K., Bhardwaj, R., Abd_Allah, E.F., Ahmad, P., and Corpas, F.J. (2019). Assessment of subcellular ROS and NO metabolism in higher plants: multifunctional signaling molecules. Antioxidants 8(12): 641.
Komis, G., Šamajová, O., Ovečka, M., and Šamaj, J. (2018). Cell and developmental biology of plant mitogen-activated protein kinases. Annu. Rev. Plant Biol. 69(1): 237-265.
Li, W., Pang, S., Lu, Z., and Jin, B. (2020). Function and mechanism of WRKY transcription factors in abiotic stress responses of plants. Plants 9(11): 1515.
Lincoln, J.E., Sanchez, J.P., Zumstein, K., and Gilchrist, D.G. (2018). Plant and animal PR1 family members inhibit programmed cell death and suppress bacterial pathogens in plant tissues. Mol. Plant Pathol. 19(9): 2111-2123.
Liu, C.-J., Miao, Y.-C., and Zhang, K.-W. (2011). Sequestration and transport of lignin monomeric precursors. Molecules 16(1): 710-727.
Liu, Q., Luo, L., and Zheng, L. (2018). Lignins: biosynthesis and biological functions in plants. Int. J. Mol. Sci. 19(2): 335.
Liu, X., Rockett, K.S., Kørner, C.J., and Pajerowska-Mukhtar, K.M. (2015). Salicylic acid signalling: new insights and prospects at a quarter-century milestone. J. Biochem. 58: 101-113.
Mang, H.G., Laluk, K.A., Parsons, E.P., Kosma, D.K., Cooper, B.R., Park, H.C., AbuQamar, S., Boccongelli, C., Miyazaki, S., and Consiglio, F. (2009). The Arabidopsis RESURRECTION1 gene regulates a novel antagonistic interaction in plant defense to biotrophs and necrotrophs. Plant Physiol. 151(1): 290-305.
Melech‐Bonfil, S., and Sessa, G. (2010). Tomato MAPKKKε is a positive regulator of cell‐death signaling networks associated with plant immunity. Plant J 64(3): 379-391.
Miedes, E., Vanholme, R., Boerjan, W., and Molina, A. (2014). The role of the secondary cell wall in plant resistance to pathogens. Front. Plant Sci. 5: 358.
Mittler, R., Vanderauwera, S., Suzuki, N., Miller, G., Tognetti, V.B., Vandepoele, K., Gollery, M., Shulaev, V., and Van Breusegem, F. (2011). ROS signaling: the new wave? Plant Sci. 16(6): 300-309.
Molinari, S., Fanelli, E., and Leonetti, P. (2014). Expression of tomato salicylic acid (SA)‐responsive pathogenesis‐related genes in Mi‐1‐mediated and SA‐induced resistance to root‐knot nematodes. Mol. Plant Pathol. 15(3): 255-264.
Moosa, A., Farzand, A., Sahi, S.T., and Khan, S.A. (2018). Transgenic expression of antifungal pathogenesis-related proteins against phytopathogenic fungi–15 years of success. Isr. J. Plant Sci. 65(1-2): 38-54.
Oliveira, M., Varanda, C., and Félix, M. (2016). Induced resistance during the interaction pathogen x plant and the use of resistance inducers. Phytochem. Lett. 15: 152-158.
Pandey, V.P., Awasthi, M., Singh, S., Tiwari, S., and Dwivedi, U.N. (2017). A comprehensive review on function and application of plant peroxidases. Anal. Biochem. 6(1): 308.
Parisi, K., Shafee, T.M., Quimbar, P., van der Weerden, N.L., Bleackley, M.R., and Anderson, M.A. (Year). "The evolution, function and mechanisms of action for plant defensins", in: Semin. Cell Biol.: Elsevier), 107-118.
Park, S.-W., Kaimoyo, E., Kumar, D., Mosher, S., and Klessig, D.F. (2007). Methyl salicylate is a critical mobile signal for plant systemic acquired resistance. Science 318(5847): 113-116.
Phukan, U.J., Jeena, G.S., and Shukla, R.K. (2016). WRKY transcription factors: molecular regulation and stress responses in plants. Front. Plant Sci. 7: 760.
Pieterse, C.M., Van Wees, S.C., Van Pelt, J.A., Knoester, M., Laan, R., Gerrits, H., Weisbeek, P.J., and Van Loon, L.C. (1998). A novel signaling pathway controlling induced systemic resistance in Arabidopsis. Plant Cell Rep. 10(9): 1571-1580.
Pieterse, C.M., Zamioudis, C., Berendsen, R.L., Weller, D.M., Van Wees, S.C., and Bakker, P.A. (2014). Induced systemic resistance by beneficial microbes. Annu. Rev. Phytopathol. 52(1): 347-375.
Rabiei, Z., Hosseini, S., Dehestani, A., Pirdashti, H., and Beiki, F. (2022). Exogenous hexanoic acid induced primary defense responses in tomato (Solanum lycopersicum L.) plants infected with Alternaria solani. Sci. Hortic. 295: 110841.
Ralph, J., Lundquist, K., Brunow, G., Lu, F., Kim, H., Schatz, P.F., Marita, J.M., Hatfield, R.D., Ralph, S.A., and Christensen, J.H. (2004). Lignins: natural polymers from oxidative coupling of 4-hydroxyphenyl-propanoids. Phytochem. Rev. 3: 29-60.
Ramezani, M., Rahmani, F., and Dehestani, A. (2017). The effect of potassium phosphite on PR genes expression and the phenylpropanoid pathway in cucumber (Cucumis sativus) plants inoculated with Pseudoperonospora cubensis. Sci. Hortic. 225: 366-372.
Ramezani, M., Ramezani, F., Rahmani, F., and Dehestani, A. (2018). Exogenous potassium phosphite application improved PR-protein expression and associated physio-biochemical events in cucumber challenged by Pseudoperonospora cubensis. Sci. Hortic. 234: 335-343.
Ramírez, V., Van der Ent, S., García-Andrade, J., Coego, A., Pieterse, C.M., and Vera, P. (2010). OCP3 is an important modulator of NPR1-mediated jasmonic acid-dependent induced defenses in Arabidopsis. BMC Plant Biol. 10: 1-13.
Sagi, M., Davydov, O., Orazova, S., Yesbergenova, Z., Ophir, R., Stratmann, J.W., and Fluhr, R. (2004). Plant respiratory burst oxidase homologs impinge on wound responsiveness and development in Lycopersicon esculentum. Plant Cell Rep. 16(3): 616-628.
Santino, A., Taurino, M., De Domenico, S., Bonsegna, S., Poltronieri, P., Pastor, V., and Flors, V. (2013). Jasmonate signaling in plant development and defense response to multiple (a) biotic stresses. Plant Cell Rep. 32: 1085-1098.
Schuetz, M., Benske, A., Smith, R.A., Watanabe, Y., Tobimatsu, Y., Ralph, J., Demura, T., Ellis, B., and Samuels, A.L. (2014). Laccases direct lignification in the discrete secondary cell wall domains of protoxylem. Plant Physiol. 166(2): 798-807.
Schwessinger, B., and Ronald, P.C. (2012). Plant innate immunity: perception of conserved microbial signatures. Annu. Rev. Plant Biol. 63(1): 451-482.
Shah, J., Tsui, F., and Klessig, D.F. (1997). Characterization of a s alicylic a cid-i nsensitive mutant (sai1) of Arabidopsis thaliana, identified in a selective screen utilizing the SA-inducible expression of the tms2 gene. Plant Mol. Biol. 10(1): 69-78.
Sher Khan, R., Iqbal, A., Malak, R., Shehryar, K., Attia, S., Ahmed, T., Ali Khan, M., Arif, M., and Mii, M. (2019). Plant defensins: types, mechanism of action and prospects of genetic engineering for enhanced disease resistance in plants. 3 Biotech 9: 1-12.
Shinde, B.A., Dholakia, B.B., Hussain, K., Aharoni, A., Giri, A.P., and Kamble, A.C. (2018). WRKY1 acts as a key component improving resistance against Alternaria solani in wild tomato, Solanum arcanum Peralta. Plant Biotechnol. J. 16(8): 1502-1513.
Singh, K.B., Foley, R.C., and Oñate-Sánchez, L. (2002). Transcription factors in plant defense and stress responses. Curr. Opin. Plant Biol. 5(5): 430-436.
Song, A., Xue, G., Cui, P., Fan, F., Liu, H., Yin, C., Sun, W., and Liang, Y. (2016). The role of silicon in enhancing resistance to bacterial blight of hydroponic-and soil-cultured rice. Sci. Rep. 6(1): 24640.
Spoel, S.H., and Dong, X. (2012). How do plants achieve immunity? Defence without specialized immune cells. Nat. Rev. Immunol. 12(2): 89-100.
Stein, E., Molitor, A., Kogel, K.-H., and Waller, F. (2008). Systemic resistance in Arabidopsis conferred by the mycorrhizal fungus Piriformospora indica requires jasmonic acid signaling and the cytoplasmic function of NPR1. Plant cell Physiol. 49(11): 1747-1751.
Stulemeijer, I.J., Stratmann, J.W., and Joosten, M.H. (2007). Tomato mitogen-activated protein kinases LeMPK1, LeMPK2, and LeMPK3 are activated during the Cf-4/Avr4-induced hypersensitive response and have distinct phosphorylation specificities. Plant Physiol. 144(3): 1481-1494.
Thomma, B.P., Eggermont, K., Penninckx, I.A., Mauch-Mani, B., Vogelsang, R., Cammue, B.P., and Broekaert, W.F. (1998). Separate jasmonate-dependent and salicylate-dependent defense-response pathways in Arabidopsis are essential for resistance to distinct microbial pathogens. Proc Natl Acad Sci 95(25): 15107-15111.
Ton, J., Van Pelt, J.A., Van Loon, L.C., and Pieterse, C.M. (2002). Differential effectiveness of salicylate-dependent and jasmonate/ethylene-dependent induced resistance in Arabidopsis. Plant Mol. Biol. Interact 15(1): 27-34.
van Loon, L.C., Rep, M., and Pieterse, C.M. (2006). Significance of inducible defense-related proteins in infected plants. Annu. Rev. Phytopathol. 44(1): 135-162.
Wang, C., El-Shetehy, M., Shine, M., Yu, K., Navarre, D., Wendehenne, D., Kachroo, A., and Kachroo, P. (2014). Free radicals mediate systemic acquired resistance. Cell Rep. 7(2): 348-355.
Wang, D., Amornsiripanitch, N., and Dong, X. (2006). A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants. PLoS Pathog. 2(11): e123.
Wang, H., Wang, H., Shao, H., and Tang, X. (2016). Recent advances in utilizing transcription factors to improve plant abiotic stress tolerance by transgenic technology. Front. Plant Sci. 7: 67.
Wang, T., Zhang, N., and Du, L. (2005). Isolation of RNA of high quality and yield from Ginkgo biloba leaves. Biotechnol. Lett. 27: 629-633.
Withers, J., and Dong, X. (2016). Posttranslational modifications of NPR1: a single protein playing multiple roles in plant immunity and physiology. PLoS Pathog. 12(8): e1005707.
Xia, X.-J., Wang, Y.-J., Zhou, Y.-H., Tao, Y., Mao, W.-H., Shi, K., Asami, T., Chen, Z., and Yu, J.-Q. (2009). Reactive oxygen species are involved in brassinosteroid-induced stress tolerance in cucumber. Plant Physiol. 150(2): 801-814.
Yang, C., Liang, Y., Qiu, D., Zeng, H., Yuan, J., and Yang, X. (2018). Lignin metabolism involves Botrytis cinerea BcGs1-induced defense response in tomato. BMC Plant Biol. 18: 1-15.
Yuan, X., Wang, H., Cai, J., Li, D., and Song, F. (2019). NAC transcription factors in plant immunity. Rev. Phytopathol. 1(1): 1-13.
Zhang, M., Su, J., Zhang, Y., Xu, J., and Zhang, S. (2018). Conveying endogenous and exogenous signals: MAPK cascades in plant growth and defense. Curr. Opin. Plant Biol. 45: 1-10.
Zheng, J., Yang, Y., Guo, X., Jin, L., Xiong, X., Yang, X., and Li, G. (2020). Exogenous SA initiated defense response and multi-signaling pathway in tetraploid potato SD20. Hortic. Plant J. 6(2): 99-110.
Zhou, M., and Wang, W. (2018). Recent advances in synthetic chemical inducers of plant immunity. Front. Plant Sci. 9: 1613.
Zipfel, C. (2009). Early molecular events in PAMP-triggered immunity. Curr. Opin. Plant Biol. 12(4): 414-420.
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