Comparative structural analysis of BRI 1 receptor in monocot and dicot plants

Document Type : Original research paper

Authors
Faculty of Agriculture, Shahrood University of Technology, Shahrood 3619995161, Iran
Abstract
Brassinosteroids (BRs) play  crucial role in growth and development of plants. The BRI1 receptor is the main receptor for BR hormones, which is a member of the leucine-rich kinase-like receptors. The BRI1 receptor has been reported in multiple plant species, but structural differences between monocots and dicots remain poorly understood. In the present study, bioinformatic analyses of the BRI gene sequence were conducted on dicot and monocot plants with existing genomic data. The analysis of genome data from 95 plants species revealed a presence of 141 BRI1 genes, with 92 being dicot and 49 being monocot. Different evolutionary paths have been identified for BRI1 genes in monocots and dicots through analysis of the phylogenetic tree. Additionally, our analysis of BRI1 orthologs based on physicochemical properties indicated a conserved structure among BRI1 proteins, with distinctions noticeable between monocots and dicots. The majority of BRI1 genes were found to contain a single exon and the average MW and pI values for BRI1 were lower in monocots compared to dicots. However, we predicted a greater number of phosphorylation sites in BRI1 orthologs of monocots. This study offers insights for future research on BRI1 genetic modification.
Keywords
Subjects

Albrecht, C., Boutrot, F., Segonzac, C., Schwessinger, B., Gimenez-Ibanez, S., Chinchilla, D., Rathjen, J.P., de Vries, S.C., and Zipfel, C. (2012). Brassinosteroids inhibit pathogen-associated molecular pattern–triggered immune signaling independent of the receptor kinase BAK1. Proc. Natl. Acad. Sci. 109(1): 303-308.
Arab, M., Najafi Zarrini, H., Nematzadeh, G., Heidari, P., Hashemipetroudi, S.H., and Kuhlmann, M. (2023). Comprehensive analysis of calcium sensor families, CBL and CIPK, in Aeluropus littoralis and their expression profile in response to salinity. Gene. 14(3): 753.
Belkhadir, Y., Jaillais, Y., Epple, P., Balsemão-Pires, E., Dangl, J.L., and Chory, J. (2012). Brassinosteroids modulate the efficiency of plant immune responses to microbe-associated molecular patterns. Proc. Natl. Acad. Sci. 109(1): 297-302.
Bolser, D.M., Staines, D.M., Perry, E., and Kersey, P.J. (2017). Ensembl plants: integrating tools for visualizing, mining, and analyzing plant genomic data. Plant Genom.: Meth. Prot.: 1-31.
Chen, W., Lv, M., Wang, Y., Wang, P.-A., Cui, Y., Li, M., Wang, R., Gou, X., and Li, J. (2019). BES1 is activated by EMS1-TPD1-SERK1/2-mediated signaling to control tapetum development in Arabidopsis thaliana. Nat. Commun. 10(1): 4164.
Chory, J., Nagpal, P., and Peto, C.A. (1991). Phenotypic and genetic analysis of det2, a new mutant that affects light-regulated seedling development in Arabidopsis. Plant Cell 3(5): 445-459.
Clouse, S.D., and Sasse, J.M. (1998). Brassinosteroids: essential regulators of plant growth and development. Annu. Rev. Plant Biol. 49(1): 427-451.
He, J.-X., Gendron, J.M., Yang, Y., Li, J., and Wang, Z.-Y. (2002). The GSK3-like kinase BIN2 phosphorylates and destabilizes BZR1, a positive regulator of the brassinosteroid signaling pathway in Arabidopsis. Proc. Natl. Acad. Sci. 99(15): 10185-10190.
He, Z., Wang, Z.-Y., Li, J., Zhu, Q., Lamb, C., Ronald, P., and Chory, J. (2000). Perception of brassinosteroids by the extracellular domain of the receptor kinase BRI1. Science 288(5475): 2360-2363.
Heidari, P., Entazari, M., Ebrahimi, A., Ahmadizadeh, M., Vannozzi, A., Palumbo, F., and Barcaccia, G. (2021). Exogenous EBR ameliorates endogenous hormone contents in tomato species under low-temperature stress. Hortic. 7(4): 84.
Heidari, P., Hasanzadeh, S., Faraji, S., Ercisli, S., and Mora-Poblete, F. (2023a). Genome-wide characterization of the sulfate transporter gene family in oilseed crops: Camelina sativa and Brassica napus. Plants 12(3): 628.
Heidari, P., Puresmaeli, F., Vafaee, Y., Ahmadizadeh, M., Ensani, M., and Ahmadinia, H. (2023b). Comparative analysis of phospholipase D (PLD) gene family in Camelina sativa and Brassica napus and its responses in Camelina seedlings under salt stress. Agron. 13(10): 2616.
Hohmann, U., Lau, K., and Hothorn, M. (2017). The structural basis of ligand perception and signal activation by receptor kinases. Annu. Rev. Plant Biol. 68(1): 109-137.
Kim, T.-W., Guan, S., Burlingame, A.L., and Wang, Z.-Y. (2011). The CDG1 kinase mediates brassinosteroid signal transduction from BRI1 receptor kinase to BSU1 phosphatase and GSK3-like kinase BIN2. Mol. Cell 43(4): 561-571.
Lescot, M., Déhais, P., Thijs, G., Marchal, K., Moreau, Y., Van de Peer, Y., Rouzé, P., and Rombauts, S. (2002). PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res. 30(1): 325-327.
Li, J., and Chory, J. (1997). A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. Cell 90(5): 929-938.
Li, J., Nam, K.H., Vafeados, D., and Chory, J. (2001). BIN2, a new brassinosteroid-insensitive locus in Arabidopsis. Plant Physiol. 127(1): 14-22.
Nguyen, L.-T., Schmidt, H.A., Von Haeseler, A., and Minh, B.Q. (2015). IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol. Biol. Evol. 32(1): 268-274.
Oh, M.-H., Ray, W.K., Huber, S.C., Asara, J.M., Gage, D.A., and Clouse, S.D. (2000). Recombinant brassinosteroid insensitive 1 receptor-like kinase autophosphorylates on serine and threonine residues and phosphorylates a conserved peptide motif in vitro. Plant Physiol. 124(2): 751-766.
Santiago, J., Henzler, C., and Hothorn, M. (2013). Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases. Science 341(6148): 889-892.
Sievers, F., and Higgins, D.G. (2018). Clustal Omega for making accurate alignments of many protein sequences. Protein Sci. 27(1): 135-145.
Szekeres, M., Németh, K., Koncz-Kálmán, Z., Mathur, J., Kauschmann, A., Altmann, T., Rédei, G.P., Nagy, F., Schell, J., and Koncz, C. (1996). Brassinosteroids rescue the deficiency of CYP90, a cytochrome P450, controlling cell elongation and de-etiolation in Arabidopsis. Cell 85(2): 171-182.
Tang, W., Kim, T.-W., Oses-Prieto, J.A., Sun, Y., Deng, Z., Zhu, S., Wang, R., Burlingame, A.L., and Wang, Z.-Y. (2008). BSKs mediate signal transduction from the receptor kinase BRI1 in Arabidopsis. Science 321(5888): 557-560.
Vert, G., and Chory, J. (2006). Downstream nuclear events in brassinosteroid signalling. Nature 441(7089): 96-100.
Vert, G., Nemhauser, J.L., Geldner, N., Hong, F., and Chory, J. (2005). Molecular mechanisms of steroid hormone signaling in plants. Annu. Rev. Cell Dev. Biol. 21(1): 177-201.
Wang, X., and Chory, J. (2006). Brassinosteroids regulate dissociation of BKI1, a negative regulator of BRI1 signaling, from the plasma membrane. Science 313(5790): 1118-1122.
Wang, X., Li, X., Meisenhelder, J., Hunter, T., Yoshida, S., Asami, T., and Chory, J. (2005). Autoregulation and homodimerization are involved in the activation of the plant steroid receptor BRI1. Dev. Cell. 8(6): 855-865.
Wang, Z.-Y., Nakano, T., Gendron, J., He, J., Chen, M., Vafeados, D., Yang, Y., Fujioka, S., Yoshida, S., and Asami, T. (2002). Nuclear-localized BZR1 mediates brassinosteroid-induced growth and feedback suppression of brassinosteroid biosynthesis. Dev. Cell 2(4): 505-513.
Wang, Z.-Y., Seto, H., Fujioka, S., Yoshida, S., and Chory, J. (2001). BRI1 is a critical component of a plasma-membrane receptor for plant steroids. Nature 410(6826): 380-383.
Yaghobi, M., and Heidari, P. (2023). Genome-wide analysis of aquaporin gene family in Triticum turgidum and its expression profile in response to salt stress. Genes 14(1): 202.
Yin, Y., Wang, Z.-Y., Mora-Garcia, S., Li, J., Yoshida, S., Asami, T., and Chory, J. (2002). BES1 accumulates in the nucleus in response to brassinosteroids to regulate gene expression and promote stem elongation. Cell 109(2): 181-191.
Zada, A., Lv, M., and Li, J. (2024). Molecular lesions in BRI1 and Its orthologs in the plant kingdom. Int. J. Mol. Sci. 25(15): 8111.
Zhang, S., Cai, Z., and Wang, X. (2009). The primary signaling outputs of brassinosteroids are regulated by abscisic acid signaling. Proc. Natl. Acad. Sci. 106(11): 4543-4548.
Zhiponova, M.K., Vanhoutte, I., Boudolf, V., Betti, C., Dhondt, S., Coppens, F., Mylle, E., Maes, S., González‐García, M.P., and Caño‐Delgado, A.I. (2013). Brassinosteroid production and signaling differentially control cell division and expansion in the leaf. New Phytol. 197(2): 490-502.